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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
ChIP-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
RRBS
3
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
Transcription
123
DNA accessibility
53
DNA methylation
8
3D chromatin structure
Target of assay
control
3
nucleotide modification
Date released
80
May, 2022
16
May, 2021
14
June, 2019
14
September, 2018
13
February, 2023
8
July, 2019
8
October, 2019
7
August, 2020
6
February, 2021
5
September, 2017
3
August, 2017
3
March, 2020
3
November, 2020
3
October, 2022
3
September, 2020
2
August, 2021
2
November, 2019
1
December, 2019
Available data
80
zippedFastqFolder
54
bed narrowPeak
54
bigWig
42
bam
40
bigBed narrowPeak
38
fastq
18
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
8
tsv
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
190
Homo sapiens
Biosample type
151
primary cell
27
cell line
13
tissue
Organ
244
pancreas
191
epithelium
177
kidney
97
bone element
93
heart
67
vasculature
64
blood vessel
50
connective tissue
49
artery
49
limb
48
musculature of body
46
liver
44
brain
37
eye
18
ureter
17
adipose tissue
12
skeleton
11
lung
9
blood
9
bodily fluid
5
spleen
5
vein
3
nerve
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
99
HPAP
92
AMP
Genome assembly (visualization)
64
hg19
51
GRCh38
Lab
99
Klaus Kaestner, Upenn
89
AMP-T2D consortium
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
5
audit script error
assay_slims!
Transcription
target.investigated_as!
control
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
191 results
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ATAC-seq
WGBS
DNase-seq
Hi-C
RRBS
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell
35
31
1
pancreatic beta cell
23
16
1
pancreatic acinar cell
9
1
endothelial cell of umbilical vein
2
2
1
pancreatic ductal cell
4
+ See 14 more…
cell line
EndoC_BH1
19
1
3
2
1
glomerular visceral epithelial cell
1
tissue
pigmented layer of retina
12
renal glomerulus
1
See all biosamples
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