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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ATAC-seq
84
ChIP-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
RRBS
3
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
Transcription
123
DNA accessibility
84
DNA binding
53
DNA methylation
8
3D chromatin structure
Target of assay
78
histone
78
histone modification
41
narrow histone mark
37
broad histone mark
control
6
RNA binding protein
6
transcription factor
3
nucleotide modification
Date released
80
May, 2022
35
September, 2018
29
October, 2019
18
June, 2019
17
August, 2017
17
May, 2021
13
February, 2023
13
November, 2019
8
July, 2019
7
August, 2020
6
February, 2021
5
August, 2021
5
September, 2017
4
March, 2020
4
May, 2019
4
November, 2017
3
November, 2020
3
October, 2022
3
September, 2020
1
December, 2019
Available data
135
bigWig
133
bed narrowPeak
126
bam
80
zippedFastqFolder
77
fastq
62
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
8
tsv
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
3
tagAlign
2
hdf5
1
tar
Organism
274
Homo sapiens
Biosample type
222
primary cell
40
cell line
in vitro differentiated cells
13
tissue
Organ
476
liver
412
pancreas
275
epithelium
234
brain
217
kidney
207
heart
147
vasculature
142
blood vessel
98
limb
97
bone element
88
connective tissue
81
musculature of body
74
artery
65
adipose tissue
63
blood
63
bodily fluid
41
eye
27
nerve
20
vein
18
ureter
17
spleen
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
174
AMP
99
HPAP
2
T1D
Genome assembly (visualization)
145
hg19
130
GRCh38
Lab
173
AMP-T2D consortium
99
Klaus Kaestner, Upenn
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
45
inconsistent ontology term
5
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
Transcription
target.investigated_as!
control
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
275 results
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ATAC-seq
ChIP-seq
WGBS
DNase-seq
Hi-C
RRBS
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell
35
7
31
1
pancreatic beta cell
23
7
16
1
endothelial cell of umbilical vein
15
2
2
1
pancreatic acinar cell
9
8
1
pancreatic ductal cell
4
13
+ See 14 more…
cell line
EndoC_BH1
19
13
1
3
2
1
glomerular visceral epithelial cell
1
tissue
pigmented layer of retina
12
renal glomerulus
1
See all biosamples
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