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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
ChIP-seq
Assay category
146
Transcription
101
DNA binding
52
DNA accessibility
2
3D chromatin structure
Target of assay
90
histone
90
histone modification
48
narrow histone mark
42
broad histone mark
9
transcription factor
8
RNA binding protein
2
control
1
chromatin remodeller
Date released
21
September, 2018
18
October, 2019
16
December, 2017
14
August, 2017
11
November, 2019
6
November, 2017
4
June, 2019
4
May, 2019
3
August, 2021
3
May, 2021
1
March, 2020
Available data
129
bam
101
bigWig
97
bed narrowPeak
72
fastq
36
bigBed narrowPeak
7
tagAlign
6
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
Organism
101
Homo sapiens
Biosample type
70
primary cell
18
in vitro differentiated cells
13
cell line
Organ
432
liver
172
brain
161
pancreas
101
epithelium
79
vasculature
76
blood vessel
75
connective tissue
74
heart
54
blood
54
bodily fluid
48
limb
39
kidney
27
musculature of body
25
artery
24
nerve
19
adipose tissue
14
embryo
12
spleen
12
vein
2
eye
1
pituitary gland
Project
99
AMP
2
T1D
Genome assembly (visualization)
101
hg19
97
GRCh38
Lab
101
AMP-T2D consortium
Audit category:
19
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
BIOSAMPLE
ASSAY
101 results
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Clear Filters
ChIP-seq
primary cell
pancreatic ductal cell
13
endothelial cell of umbilical vein
12
epithelial cell of proximal tubule
8
pancreatic acinar cell
8
pancreatic alpha cell
7
+ See 6 more…
in vitro differentiated cells
hepatocyte
14
Hepatic endoderm
2
pancreatic PP cell
2
cell line
EndoC_BH1
13
See all biosamples
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