Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
ChIP-seq
20
ATAC-seq
6
MeRIP-seq
2
Capture-C
1
DNase-seq
1
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
35
Transcription
21
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
3
control
3
nucleotide modification
Date released
26
February, 2021
21
May, 2021
6
November, 2020
4
March, 2020
3
November, 2019
2
August, 2021
1
July, 2018
1
July, 2019
1
June, 2019
1
October, 2019
Available data
38
bam
38
bigWig
36
tsv
3
bed narrowPeak
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed broadPeak
1
bigBed narrowPeak
1
fastq
1
hic
Organism
66
Homo sapiens
Biosample type
61
cell line
4
primary cell
1
in vitro differentiated cells
Organ
84
bone element
66
epithelium
66
pancreas
8
connective tissue
7
kidney
2
embryo
2
heart
1
adipose tissue
1
brain
1
limb
1
liver
1
musculature of body
1
stomach
1
urinary bladder
1
vasculature
Project
64
AMP
2
T1D
Genome assembly (visualization)
42
hg19
38
GRCh38
Lab
60
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
66
inconsistent ontology term
5
audit script error
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
66 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
MeRIP-seq
Capture-C
DNase-seq
Hi-C
RRBS
single cell RNA-seq
cell line
EndoC_BH1
33
19
6
2
1
primary cell
epithelial cell of proximal tubule
1
1
Liver fetal (hepatocyte)
1
pancreatic acinar cell
1
in vitro differentiated cells
intermediate endothelial cell
1
Download