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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
129
ChIP-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
129
DNA binding
8
3D chromatin structure
Target of assay
93
histone
93
histone modification
49
narrow histone mark
44
broad histone mark
27
control
9
transcription factor
8
RNA binding protein
1
chromatin remodeller
Date released
26
August, 2017
25
October, 2019
21
September, 2018
19
December, 2017
14
November, 2019
6
June, 2019
6
November, 2017
5
May, 2019
4
August, 2021
4
May, 2021
3
October, 2022
2
July, 2019
2
March, 2020
Available data
129
bam
103
bigWig
97
bed narrowPeak
72
fastq
36
bigBed narrowPeak
7
tagAlign
6
bed broadPeak
6
bigBed broadPeak
6
hic
5
bed bed3+
5
bedpe bed3+
3
cool
2
hdf5
Organism
137
Homo sapiens
Biosample type
99
primary cell
22
in vitro differentiated cells
16
cell line
Organ
556
liver
227
pancreas
221
brain
154
connective tissue
137
epithelium
107
vasculature
104
blood vessel
97
heart
73
adipose tissue
70
limb
60
blood
60
bodily fluid
53
kidney
45
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
19
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
132
AMP
3
HPAP
2
T1D
Genome assembly (visualization)
109
hg19
97
GRCh38
Lab
134
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
26
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
BIOSAMPLE
ASSAY
137 results
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ChIP-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic ductal cell
13
epithelial cell of proximal tubule
10
+ See 7 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
cell line
EndoC_BH1
15
1
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