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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
129
ChIP-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
129
DNA binding
70
Transcription
Target of assay
93
histone
93
histone modification
49
narrow histone mark
44
broad histone mark
27
control
9
transcription factor
8
RNA binding protein
1
chromatin remodeller
Date released
33
April, 2018
33
July, 2018
26
August, 2017
24
October, 2019
21
September, 2018
19
December, 2017
13
November, 2019
6
June, 2019
6
November, 2017
5
May, 2019
4
August, 2021
4
May, 2021
3
August, 2018
1
June, 2018
1
March, 2020
Available data
199
bam
171
bigWig
138
fastq
97
bed narrowPeak
70
tsv
36
bigBed narrowPeak
7
tagAlign
6
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
Organism
199
Homo sapiens
Biosample type
162
primary cell
22
in vitro differentiated cells
15
cell line
Organ
553
liver
292
pancreas
221
brain
199
epithelium
187
heart
157
connective tissue
116
kidney
108
vasculature
105
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
40
musculature of body
36
artery
35
nerve
22
embryo
20
spleen
17
vein
9
lung
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
197
AMP
2
T1D
Genome assembly (visualization)
171
hg19
167
GRCh38
Lab
199
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
BIOSAMPLE
ASSAY
199 results
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ChIP-seq
single cell RNA-seq
primary cell
pancreatic alpha cell
13
12
pancreatic beta cell
13
12
pancreatic ductal cell
13
10
pancreatic acinar cell
8
12
endothelial cell of umbilical vein
17
+ See 10 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
cell line
EndoC_BH1
15
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