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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
110
ChIP-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
110
DNA binding
Target of assay
79
histone
79
histone modification
42
narrow histone mark
37
broad histone mark
24
control
7
transcription factor
6
RNA binding protein
Date released
26
August, 2017
24
October, 2019
21
September, 2018
December, 2017
13
November, 2019
6
June, 2019
6
November, 2017
5
May, 2019
4
August, 2021
4
May, 2021
1
March, 2020
Available data
110
bam
85
bigWig
81
bed narrowPeak
53
fastq
22
bigBed narrowPeak
7
tagAlign
6
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
Organism
110
Homo sapiens
Biosample type
92
primary cell
15
cell line
3
in vitro differentiated cells
Organ
489
liver
218
brain
218
pancreas
153
connective tissue
110
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
20
spleen
17
vein
9
embryo
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
108
AMP
2
T1D
Genome assembly (visualization)
85
hg19
81
GRCh38
Lab
110
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
December, 2017
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
primary cell
endothelial cell of umbilical vein
17
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
epithelial cell of proximal tubule
10
+ See 6 more…
cell line
EndoC_BH1
15
in vitro differentiated cells
pancreatic PP cell
3
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