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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
105
total RNA-seq
89
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
108
DNA binding
Target of assay
72
histone
72
histone modification
38
narrow histone mark
34
broad histone mark
27
control
9
transcription factor
8
RNA binding protein
1
chromatin remodeller
Date released
26
August, 2017
24
October, 2019
September, 2018
19
December, 2017
13
November, 2019
6
June, 2019
6
November, 2017
5
May, 2019
4
August, 2021
4
May, 2021
1
March, 2020
Available data
108
bam
80
bigWig
76
bed narrowPeak
51
fastq
36
bigBed narrowPeak
7
tagAlign
6
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
Organism
108
Homo sapiens
Biosample type
71
primary cell
22
in vitro differentiated cells
15
cell line
Organ
552
liver
218
brain
186
pancreas
153
connective tissue
108
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
106
AMP
2
T1D
Genome assembly (visualization)
80
hg19
76
GRCh38
Lab
108
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
Audit category:
5
inconsistent control read length
month_released!
September, 2018
BIOSAMPLE
ASSAY
108 results
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ChIP-seq
primary cell
endothelial cell of umbilical vein
17
pancreatic alpha cell
13
pancreatic beta cell
13
epithelial cell of proximal tubule
10
kidney epithelial cell
5
+ See 4 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
cell line
EndoC_BH1
15
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