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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
131
total RNA-seq
104
ATAC-seq
70
single cell RNA-seq
49
WGBS
20
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
1
pCHi-C
Assay category
149
DNA binding
Target of assay
99
histone
99
histone modification
51
narrow histone mark
48
broad histone mark
35
control
15
transcription factor
8
RNA binding protein
3
other context
3
other post-translational modification
1
chromatin remodeller
Date released
26
August, 2017
24
October, 2019
21
September, 2018
19
December, 2017
13
November, 2019
7
December, 2018
7
January, 2019
6
June, 2019
6
November, 2017
6
November, 2018
5
May, 2019
4
August, 2021
4
May, 2021
1
March, 2020
Available data
149
bam
113
bigWig
109
bed narrowPeak
92
fastq
48
bigBed narrowPeak
7
tagAlign
6
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
Organism
149
Homo sapiens
Biosample type
92
primary cell
22
in vitro differentiated cells
20
tissue
15
cell line
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
147
AMP
2
T1D
Genome assembly (visualization)
113
hg19
109
GRCh38
Lab
149
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
BIOSAMPLE
ASSAY
149 results
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Clear Filters
ChIP-seq
primary cell
endothelial cell of umbilical vein
17
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
epithelial cell of proximal tubule
10
+ See 6 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
tissue
spleen
20
cell line
EndoC_BH1
15
See all biosamples
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