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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
total RNA-seq
129
ChIP-seq
103
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
19
DNA accessibility
6
DNA methylation
Date released
14
June, 2019
6
July, 2019
5
October, 2019
Available data
17
bam
17
bed narrowPeak
17
bigBed narrowPeak
17
bigWig
16
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
25
Homo sapiens
Biosample type
24
primary cell
1
cell line
Organ
85
kidney
38
musculature of body
36
limb
34
brain
32
heart
25
epithelium
18
ureter
12
vasculature
10
connective tissue
10
pancreas
9
blood vessel
8
liver
5
eye
4
artery
2
adipose tissue
2
nerve
2
vein
1
pericardium
1
spleen
Project
25
AMP
Genome assembly (visualization)
17
GRCh38
17
hg19
Lab
25
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
25 results
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DNase-seq
RRBS
primary cell
kidney tubule cell
3
choroid plexus epithelial cell
1
1
endothelial cell of umbilical vein
2
epithelial cell of proximal tubule
1
1
glomerular visceral epithelial cell
2
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cell line
glomerular visceral epithelial cell
1
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