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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ATAC-seq
53
total RNA-seq
47
WGBS
28
ChIP-seq
8
DNase-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
73
DNA accessibility
53
Transcription
47
DNA methylation
28
DNA binding
Target of assay
28
control
3
histone
3
histone modification
3
nucleotide modification
2
broad histone mark
1
narrow histone mark
Date released
80
May, 2022
38
February, 2023
19
September, 2020
17
May, 2021
12
August, 2017
8
June, 2019
8
October, 2019
7
August, 2020
6
February, 2021
6
November, 2020
3
August, 2021
3
December, 2017
2
November, 2019
1
May, 2019
Available data
84
fastq
80
zippedFastqFolder
34
bam
16
bigWig
6
bed bed3+
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
6
tsv
2
tagAlign
Organism
209
Homo sapiens
Biosample type
179
primary cell
27
cell line
4
in vitro differentiated cells
tissue
Organ
210
epithelium
196
pancreas
73
liver
30
connective tissue
18
kidney
14
blood
14
bodily fluid
8
blood vessel
8
embryo
8
vasculature
5
heart
5
vein
2
artery
2
musculature of body
1
adipose tissue
1
bone element
1
bone marrow
1
eye
1
mammary gland
Project
149
HPAP
61
AMP
Genome assembly (visualization)
hg19
294
GRCh38
Lab
149
Klaus Kaestner, Upenn
55
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
30
inconsistent ontology term
assembly!
hg19
biosample_type!
tissue
BIOSAMPLE
ASSAY
210 results
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ATAC-seq
total RNA-seq
WGBS
ChIP-seq
DNase-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
29
42
31
6
pancreatic beta cell
16
11
16
6
endothelial cell of umbilical vein
5
pancreatic acinar cell
4
kidney tubule cell
3
+ See 7 more…
cell line
EndoC_BH1
16
2
6
2
1
in vitro differentiated cells
Hepatic endoderm
2
hepatocyte
1
pancreatic PP cell
1
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