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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ATAC-seq
47
WGBS
28
ChIP-seq
8
DNase-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
73
DNA accessibility
Transcription
47
DNA methylation
28
DNA binding
Target of assay
28
control
3
histone
3
histone modification
3
nucleotide modification
2
broad histone mark
1
narrow histone mark
Date released
80
May, 2022
17
May, 2021
12
August, 2017
8
June, 2019
8
October, 2019
7
August, 2020
6
February, 2021
6
November, 2020
3
August, 2021
3
December, 2017
3
September, 2020
2
November, 2019
1
December, 2019
1
February, 2023
1
May, 2019
Available data
80
zippedFastqFolder
34
bam
31
fastq
16
bigWig
7
tsv
6
bed bed3+
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
2
tagAlign
Organism
157
Homo sapiens
Biosample type
126
primary cell
27
cell line
4
in vitro differentiated cells
1
tissue
Organ
215
pancreas
158
epithelium
135
liver
112
kidney
110
brain
109
heart
89
connective tissue
85
bone element
63
adipose tissue
62
blood vessel
62
vasculature
44
artery
23
limb
20
musculature of body
14
blood
14
bodily fluid
11
lung
11
nerve
11
spleen
8
embryo
8
eye
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
96
HPAP
62
AMP
Genome assembly (visualization)
hg19
148
GRCh38
Lab
96
Klaus Kaestner, Upenn
56
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
30
inconsistent ontology term
1
audit script error
assembly!
hg19
organ_slims!
lymph node
assay_slims!
Transcription
BIOSAMPLE
ASSAY
158 results
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ATAC-seq
WGBS
ChIP-seq
DNase-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
29
31
6
pancreatic beta cell
16
16
6
endothelial cell of umbilical vein
5
pancreatic acinar cell
4
kidney tubule cell
3
+ See 7 more…
cell line
EndoC_BH1
16
2
6
2
1
in vitro differentiated cells
Hepatic endoderm
2
hepatocyte
1
pancreatic PP cell
1
tissue
renal glomerulus
1
See all biosamples
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