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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ATAC-seq
55
total RNA-seq
47
WGBS
8
DNase-seq
3
ChIP-seq
3
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
73
DNA accessibility
55
Transcription
47
DNA methylation
3
DNA binding
Target of assay
control
3
histone
3
histone modification
3
nucleotide modification
2
broad histone mark
1
narrow histone mark
Date released
80
May, 2022
40
February, 2023
19
September, 2020
16
May, 2021
7
August, 2020
6
February, 2021
6
June, 2019
5
October, 2019
3
November, 2020
2
August, 2021
1
December, 2019
Available data
80
zippedFastqFolder
69
fastq
16
bigWig
9
bam
9
tsv
6
bed bed3+
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
Organism
184
Homo sapiens
Biosample type
160
primary cell
22
cell line
3
tissue
Organ
237
pancreas
213
kidney
185
epithelium
145
heart
97
brain
89
bone element
72
liver
61
connective tissue
51
blood vessel
51
vasculature
41
adipose tissue
39
artery
26
eye
20
lung
17
musculature of body
9
limb
8
blood
8
bodily fluid
5
gonad
5
ovary
4
skeleton
3
spleen
3
vein
2
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
HPAP
36
AMP
Genome assembly (visualization)
hg19
294
GRCh38
Lab
149
Klaus Kaestner, Upenn
33
AMP-T2D consortium
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
21
inconsistent ontology term
1
audit script error
assembly!
hg19
target.investigated_as!
control
BIOSAMPLE
ASSAY
185 results
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ATAC-seq
total RNA-seq
WGBS
DNase-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
29
42
31
pancreatic beta cell
16
11
16
pancreatic acinar cell
4
endothelial cell of umbilical vein
3
kidney tubule cell
3
+ See 3 more…
cell line
EndoC_BH1
16
3
2
1
tissue
pigmented layer of retina
2
renal glomerulus
1
See all biosamples
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