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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
49
ATAC-seq
47
WGBS
8
DNase-seq
3
ChIP-seq
1
RNA microarray
Assay category
57
DNA accessibility
55
Transcription
47
DNA methylation
3
DNA binding
Target of assay
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
80
May, 2022
39
February, 2023
19
September, 2020
7
August, 2020
6
February, 2021
6
June, 2019
5
October, 2019
1
December, 2019
Available data
80
zippedFastqFolder
69
fastq
16
bigWig
9
bam
9
tsv
6
bed bed3+
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
Organism
163
Homo sapiens
Biosample type
160
primary cell
cell line
3
tissue
Organ
214
pancreas
209
kidney
185
heart
163
epithelium
97
brain
89
bone element
61
connective tissue
51
blood vessel
51
vasculature
48
liver
41
adipose tissue
39
artery
26
eye
20
lung
17
musculature of body
9
limb
8
blood
8
bodily fluid
5
gonad
5
ovary
4
skeleton
3
spleen
3
vein
2
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
HPAP
14
AMP
Genome assembly (visualization)
hg19
245
GRCh38
Lab
149
Klaus Kaestner, Upenn
14
AMP-T2D consortium
Audit category:
1
audit script error
assembly!
hg19
target.investigated_as!
control
biosample_type!
cell line
BIOSAMPLE
ASSAY
163 results
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total RNA-seq
ATAC-seq
WGBS
DNase-seq
ChIP-seq
RNA microarray
primary cell
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
pancreatic acinar cell
4
endothelial cell of umbilical vein
3
kidney tubule cell
3
+ See 3 more…
tissue
pigmented layer of retina
2
renal glomerulus
1
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