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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ATAC-seq
47
WGBS
28
ChIP-seq
16
total RNA-seq
8
DNase-seq
3
MeRIP-seq
2
Capture-C
1
RNA microarray
Assay category
73
DNA accessibility
47
DNA methylation
28
DNA binding
16
Transcription
Target of assay
28
control
3
histone
3
histone modification
nucleotide modification
2
broad histone mark
1
narrow histone mark
Date released
80
May, 2022
February, 2023
19
September, 2020
17
May, 2021
12
August, 2017
8
June, 2019
8
October, 2019
7
August, 2020
6
February, 2021
3
August, 2021
3
December, 2017
3
November, 2020
2
November, 2019
1
December, 2019
1
May, 2019
Available data
80
zippedFastqFolder
47
fastq
34
bam
16
bigWig
7
tsv
6
bed bed3+
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
2
tagAlign
Organism
170
Homo sapiens
Biosample type
142
primary cell
23
cell line
4
in vitro differentiated cells
1
tissue
Organ
227
pancreas
225
kidney
170
epithelium
169
heart
166
liver
122
brain
91
connective tissue
85
bone element
65
adipose tissue
36
blood vessel
36
vasculature
26
limb
23
eye
23
musculature of body
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
112
HPAP
58
AMP
Genome assembly (visualization)
hg19
294
GRCh38
Lab
112
Klaus Kaestner, Upenn
55
AMP-T2D consortium
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
27
inconsistent ontology term
1
audit script error
assembly!
hg19
target.investigated_as!
nucleotide modification
month_released!
February, 2023
BIOSAMPLE
ASSAY
170 results
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ATAC-seq
WGBS
ChIP-seq
total RNA-seq
DNase-seq
MeRIP-seq
Capture-C
RNA microarray
primary cell
pancreatic alpha cell
29
31
6
15
pancreatic beta cell
16
16
6
1
endothelial cell of umbilical vein
5
pancreatic acinar cell
4
kidney tubule cell
3
+ See 7 more…
cell line
EndoC_BH1
16
2
3
2
in vitro differentiated cells
Hepatic endoderm
2
hepatocyte
1
pancreatic PP cell
1
tissue
renal glomerulus
1
See all biosamples
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