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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
34
ATAC-seq
16
DNase-seq
1
FAIRE-seq
Assay category
64
DNA binding
51
DNA accessibility
Target of assay
60
histone
60
histone modification
33
narrow histone mark
27
broad histone mark
4
transcription factor
3
RNA binding protein
Date released
35
September, 2018
20
October, 2019
17
August, 2017
15
June, 2019
December, 2017
12
February, 2023
5
September, 2017
4
November, 2017
3
August, 2021
2
May, 2019
2
May, 2021
Available data
239
bam
237
fastq
230
bigWig
120
tsv
115
bed narrowPeak
80
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
20
bed bed3+
7
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
5
hic
4
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
115
Homo sapiens
Biosample type
100
primary cell
12
tissue
2
in vitro differentiated cells
1
cell line
Organ
390
liver
201
brain
200
pancreas
187
heart
171
kidney
132
vasculature
129
blood vessel
115
epithelium
91
limb
74
artery
64
connective tissue
54
blood
54
bodily fluid
52
musculature of body
33
eye
27
nerve
18
ureter
14
spleen
13
vein
12
adipose tissue
8
bone element
8
skeleton
6
embryo
1
pituitary gland
Project
115
AMP
Genome assembly (visualization)
109
hg19
102
GRCh38
Lab
115
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
month_released!
December, 2017
BIOSAMPLE
ASSAY
115 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic ductal cell
13
4
pancreatic beta cell
7
7
endothelial cell of umbilical vein
10
2
1
pancreatic acinar cell
8
5
pancreatic alpha cell
7
6
+ See 12 more…
tissue
pigmented layer of retina
12
in vitro differentiated cells
pancreatic PP cell
2
cell line
glomerular visceral epithelial cell
1
See all biosamples
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