Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
49
ATAC-seq
47
WGBS
22
ChIP-seq
8
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
57
DNA accessibility
55
Transcription
47
DNA methylation
22
DNA binding
Target of assay
19
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
80
May, 2022
40
February, 2023
19
September, 2020
12
August, 2017
8
October, 2019
7
August, 2020
7
June, 2019
6
February, 2021
1
August, 2021
1
December, 2017
1
December, 2019
1
May, 2021
Available data
82
fastq
80
zippedFastqFolder
28
bam
16
bigWig
9
tsv
6
bed bed3+
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
2
tagAlign
Organism
182
Homo sapiens
Biosample type
177
primary cell
3
tissue
2
in vitro differentiated cells
1
cell line
Organ
262
pancreas
218
kidney
204
heart
183
epithelium
166
liver
121
brain
90
connective tissue
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
22
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
6
embryo
5
bone element
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
Project
149
HPAP
34
AMP
Genome assembly (visualization)
hg19
237
GRCh38
Lab
149
Klaus Kaestner, Upenn
34
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
audit.ERROR.category!
inconsistent ontology term
organ_slims!
thymus
assembly!
hg19
BIOSAMPLE
ASSAY
183 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
WGBS
ChIP-seq
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
42
29
31
6
pancreatic beta cell
11
16
16
6
endothelial cell of umbilical vein
5
pancreatic acinar cell
4
kidney tubule cell
3
+ See 6 more…
tissue
pigmented layer of retina
2
renal glomerulus
1
in vitro differentiated cells
hepatocyte
1
pancreatic PP cell
1
cell line
EndoC_BH1
1
See all biosamples
Download