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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
12
ATAC-seq
4
total RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
RNA microarray
Assay category
18
DNA binding
13
DNA accessibility
4
Transcription
Target of assay
13
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
3
transcription factor
2
RNA binding protein
2
control
1
chromatin remodeller
Date released
15
December, 2017
15
February, 2023
4
May, 2021
2
October, 2019
1
December, 2019
Available data
29
bed narrowPeak
21
bam
19
bigWig
15
bigBed narrowPeak
15
fastq
5
tsv
3
tagAlign
Organism
36
Homo sapiens
Biosample type
primary cell
19
in vitro differentiated cells
15
tissue
3
cell line
Organ
777
liver
639
connective tissue
524
pancreas
488
adipose tissue
380
heart
303
kidney
262
brain
199
blood vessel
199
vasculature
139
artery
121
limb
81
musculature of body
74
bone element
61
blood
61
bodily fluid
56
eye
43
nerve
37
epithelium
31
embryo
25
spleen
20
lung
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
Project
37
AMP
Genome assembly (visualization)
31
hg19
19
GRCh38
Lab
37
AMP-T2D consortium
Audit category:
inconsistent ontology term
1
audit script error
audit.ERROR.category!
inconsistent ontology term
organ_slims!
ureter
biosample_type!
primary cell
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
ATAC-seq
total RNA-seq
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
RNA microarray
in vitro differentiated cells
hepatocyte
15
pancreatic PP cell
3
endothelial cell
1
tissue
pigmented layer of retina
12
2
renal glomerulus
1
cell line
glomerular visceral epithelial cell
1
1
EndoC_BH1
1
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