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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ATAC-seq
6
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
Hi-C
1
RRBS
Assay category
18
DNA accessibility
6
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
9
control
3
nucleotide modification
Date released
16
May, 2021
6
November, 2020
3
November, 2019
2
August, 2021
2
December, 2017
2
March, 2020
1
July, 2019
1
June, 2019
1
May, 2019
Available data
6
bam
2
bigWig
2
fastq
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
tsv
Organism
34
Homo sapiens
Biosample type
29
cell line
3
primary cell
2
in vitro differentiated cells
Organ
84
bone element
34
epithelium
29
pancreas
8
connective tissue
8
kidney
2
embryo
2
heart
1
brain
1
musculature of body
1
stomach
1
urinary bladder
Project
34
AMP
Genome assembly (visualization)
61
hg19
GRCh38
Lab
28
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
34
inconsistent ontology term
5
audit script error
assembly!
GRCh38
BIOSAMPLE
ASSAY
34 results
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ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
Hi-C
RRBS
cell line
EndoC_BH1
18
2
6
2
1
primary cell
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
in vitro differentiated cells
Hepatic endoderm
2
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