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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
20
ATAC-seq
19
ChIP-seq
2
Capture-C
1
Hi-C
1
single cell RNA-seq
Assay category
35
Transcription
20
DNA accessibility
19
DNA binding
1
3D chromatin structure
Target of assay
14
histone
14
histone modification
8
narrow histone mark
6
broad histone mark
4
control
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
22
May, 2021
16
November, 2019
5
March, 2020
4
December, 2017
2
August, 2021
1
July, 2018
1
October, 2019
Available data
56
bam
52
bigWig
36
tsv
17
bed narrowPeak
5
fastq
1
bedpe bed3+
1
hic
Organism
77
Homo sapiens
Biosample type
70
cell line
5
in vitro differentiated cells
2
primary cell
Organ
85
epithelium
84
bone element
75
pancreas
kidney
19
connective tissue
9
musculature of body
6
embryo
6
heart
3
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
73
AMP
4
T1D
Genome assembly (visualization)
55
hg19
52
GRCh38
Lab
77
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
77
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent control read length
organ_slims!
kidney
BIOSAMPLE
ASSAY
77 results
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total RNA-seq
ATAC-seq
ChIP-seq
Capture-C
Hi-C
single cell RNA-seq
cell line
EndoC_BH1
33
19
15
2
1
in vitro differentiated cells
Hepatic endoderm
4
intermediate endothelial cell
1
primary cell
Liver fetal (hepatocyte)
1
pancreatic acinar cell
1
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