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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
19
ATAC-seq
12
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
DNase-seq
1
RRBS
1
single cell RNA-seq
Assay category
34
Transcription
20
DNA accessibility
12
DNA binding
1
DNA methylation
Target of assay
7
control
6
histone
6
histone modification
6
narrow histone mark
3
nucleotide modification
2
RNA binding protein
2
transcription factor
Date released
26
February, 2021
22
May, 2021
November, 2019
6
November, 2020
5
March, 2020
4
December, 2017
4
June, 2019
3
May, 2019
2
August, 2021
1
July, 2018
1
July, 2019
1
October, 2019
Available data
48
bam
45
bigWig
35
tsv
10
bed narrowPeak
5
bigBed narrowPeak
5
fastq
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
Organism
75
Homo sapiens
Biosample type
60
cell line
10
primary cell
5
in vitro differentiated cells
Organ
84
bone element
75
epithelium
65
pancreas
23
kidney
18
connective tissue
9
musculature of body
6
embryo
6
heart
3
brain
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
71
AMP
4
T1D
Genome assembly (visualization)
47
hg19
44
GRCh38
Lab
69
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
75
inconsistent ontology term
5
audit script error
Audit category:
1
inconsistent control read length
month_released!
November, 2019
BIOSAMPLE
ASSAY
75 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
DNase-seq
RRBS
single cell RNA-seq
cell line
EndoC_BH1
32
18
2
6
2
primary cell
epithelial cell of proximal tubule
3
1
1
kidney epithelial cell
3
Liver fetal (hepatocyte)
1
pancreatic acinar cell
1
in vitro differentiated cells
Hepatic endoderm
4
intermediate endothelial cell
1
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