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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
22
ChIP-seq
20
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
DNase-seq
1
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
35
Transcription
22
DNA accessibility
22
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
15
histone
15
histone modification
9
narrow histone mark
8
control
6
broad histone mark
3
nucleotide modification
2
RNA binding protein
2
transcription factor
Date released
26
February, 2021
22
May, 2021
16
November, 2019
6
November, 2020
5
June, 2019
5
March, 2020
4
December, 2017
May, 2019
2
August, 2021
1
July, 2018
1
July, 2019
1
October, 2019
Available data
61
bam
56
bigWig
36
tsv
21
bed narrowPeak
5
fastq
4
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
89
Homo sapiens
Biosample type
76
cell line
7
primary cell
5
in vitro differentiated cells
1
tissue
Organ
88
epithelium
84
bone element
81
pancreas
20
kidney
19
connective tissue
9
musculature of body
6
embryo
6
heart
3
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
85
AMP
4
T1D
Genome assembly (visualization)
60
hg19
56
GRCh38
Lab
83
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
89
inconsistent ontology term
5
audit script error
Audit category:
1
inconsistent control read length
month_released!
May, 2019
BIOSAMPLE
ASSAY
89 results
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total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
DNase-seq
Hi-C
RRBS
single cell RNA-seq
cell line
EndoC_BH1
33
15
19
6
2
1
primary cell
epithelial cell of proximal tubule
3
1
1
Liver fetal (hepatocyte)
1
pancreatic acinar cell
1
in vitro differentiated cells
Hepatic endoderm
4
intermediate endothelial cell
1
tissue
muscle of leg
1
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