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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
total RNA-seq
103
ATAC-seq
101
ChIP-seq
70
single cell RNA-seq
47
WGBS
14
DNase-seq
6
MeRIP-seq
5
RRBS
4
Hi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
14
DNA accessibility
Date released
11
June, 2019
3
October, 2019
Available data
12
bam
12
bed narrowPeak
12
bigBed narrowPeak
12
bigWig
11
bed bed3+
11
bed broadPeak
11
bigBed broadPeak
Organism
14
Homo sapiens
Biosample type
13
primary cell
1
cell line
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
14
AMP
Genome assembly (visualization)
12
GRCh38
7
hg19
Lab
14
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.WARNING.category!
inconsistent control read length
organ_slims!
vasculature
BIOSAMPLE
ASSAY
14 results
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DNase-seq
primary cell
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
+ See 4 more…
cell line
glomerular visceral epithelial cell
1
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