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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
35
ATAC-seq
16
DNase-seq
1
FAIRE-seq
Assay category
84
DNA binding
52
DNA accessibility
Target of assay
76
histone
76
histone modification
42
narrow histone mark
34
broad histone mark
8
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
35
September, 2018
20
October, 2019
18
June, 2019
17
August, 2017
16
December, 2017
12
February, 2023
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2021
2
May, 2021
Available data
266
bam
257
fastq
249
bigWig
136
bed narrowPeak
121
tsv
80
zippedFastqFolder
75
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
19
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
1
tar
Organism
136
Homo sapiens
Biosample type
106
primary cell
18
in vitro differentiated cells
cell line
12
tissue
Organ
203
brain
193
pancreas
179
heart
175
kidney
136
epithelium
133
liver
121
vasculature
117
blood vessel
92
limb
75
connective tissue
62
artery
60
musculature of body
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
136
AMP
Genome assembly (visualization)
130
hg19
123
GRCh38
Lab
136
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
biosample_type!
cell line
assay_title!
Hi-C
BIOSAMPLE
ASSAY
136 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic ductal cell
13
4
pancreatic beta cell
7
7
endothelial cell of umbilical vein
10
2
1
pancreatic acinar cell
8
5
pancreatic alpha cell
7
6
+ See 13 more…
in vitro differentiated cells
hepatocyte
14
Hepatic endoderm
2
pancreatic PP cell
2
tissue
pigmented layer of retina
12
See all biosamples
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