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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
single cell RNA-seq
44
total RNA-seq
6
WGBS
1
RNA microarray
Assay category
114
Transcription
6
DNA methylation
Date released
33
April, 2018
33
July, 2018
26
September, 2018
6
December, 2019
6
February, 2021
5
July, 2019
3
August, 2018
2
February, 2023
2
May, 2021
2
October, 2018
2
October, 2019
1
June, 2018
Available data
266
bam
257
fastq
251
bigWig
bed narrowPeak
121
tsv
80
zippedFastqFolder
75
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
121
Homo sapiens
Biosample type
116
primary cell
cell line
3
tissue
2
in vitro differentiated cells
Organ
478
connective tissue
401
adipose tissue
383
pancreas
159
liver
121
epithelium
116
heart
58
bone element
26
brain
18
kidney
16
blood vessel
16
vasculature
9
musculature of body
7
limb
6
artery
6
embryo
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
115
AMP
6
HPAP
Genome assembly (visualization)
112
GRCh38
112
hg19
Lab
115
AMP-T2D consortium
6
Klaus Kaestner, Upenn
Audit category:
2
inconsistent ontology term
1
audit script error
biosample_type!
cell line
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
121 results
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single cell RNA-seq
total RNA-seq
WGBS
RNA microarray
primary cell
pancreatic alpha cell
12
10
6
pancreatic beta cell
12
10
pancreatic acinar cell
12
4
pancreatic ductal cell
10
4
pancreatic delta cell
11
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tissue
pigmented layer of retina
2
renal glomerulus
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
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