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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
52
ATAC-seq
47
WGBS
23
ChIP-seq
6
RRBS
5
Hi-C
2
DNase-seq
1
RNA microarray
Assay category
55
Transcription
54
DNA accessibility
53
DNA methylation
23
DNA binding
5
3D chromatin structure
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
80
May, 2022
51
February, 2023
16
September, 2020
12
August, 2017
10
October, 2019
6
February, 2021
6
July, 2019
December, 2017
3
October, 2022
2
June, 2019
1
August, 2021
1
December, 2019
1
March, 2020
1
May, 2019
1
May, 2021
Available data
247
bam
238
fastq
bigWig
121
tsv
120
bed narrowPeak
80
zippedFastqFolder
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
191
Homo sapiens
Biosample type
175
primary cell
cell line
15
tissue
1
in vitro differentiated cells
Organ
287
pancreas
216
kidney
191
epithelium
159
heart
114
connective tissue
101
bone element
87
liver
71
vasculature
70
blood vessel
66
adipose tissue
64
brain
55
eye
46
artery
31
limb
28
musculature of body
20
lung
16
skeleton
12
nerve
9
spleen
8
blood
8
bodily fluid
7
vein
5
gonad
5
ovary
3
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
142
HPAP
49
AMP
Genome assembly (visualization)
24
hg19
1
GRCh38
Lab
142
Klaus Kaestner, Upenn
49
AMP-T2D consortium
Audit category:
5
audit script error
4
inconsistent ontology term
biosample_type!
cell line
files.file_type!
bigWig
month_released!
December, 2017
BIOSAMPLE
ASSAY
191 results
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total RNA-seq
ATAC-seq
WGBS
ChIP-seq
RRBS
Hi-C
DNase-seq
RNA microarray
primary cell
pancreatic alpha cell
42
22
31
6
1
pancreatic beta cell
11
13
16
6
1
endothelial cell of umbilical vein
5
2
pancreatic acinar cell
4
1
epithelial cell of proximal tubule
2
1
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tissue
pigmented layer of retina
2
12
renal glomerulus
1
in vitro differentiated cells
pancreatic PP cell
1
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