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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
total RNA-seq
81
ATAC-seq
70
single cell RNA-seq
66
ChIP-seq
47
WGBS
18
DNase-seq
7
Hi-C
6
RRBS
1
FAIRE-seq
1
RNA microarray
Assay category
165
Transcription
100
DNA accessibility
66
DNA binding
53
DNA methylation
7
3D chromatin structure
Target of assay
52
histone
52
histone modification
27
narrow histone mark
25
broad histone mark
9
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
61
September, 2018
51
February, 2023
33
April, 2018
33
July, 2018
33
October, 2019
August, 2017
20
June, 2019
19
September, 2020
13
July, 2019
7
August, 2020
6
December, 2019
6
February, 2021
6
November, 2017
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
214
bigWig
213
bam
209
fastq
119
tsv
101
bed narrowPeak
80
zippedFastqFolder
58
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
392
Homo sapiens
Biosample type
377
primary cell
cell line
in vitro differentiated cells
15
tissue
Organ
663
pancreas
530
connective tissue
433
adipose tissue
392
epithelium
335
kidney
326
heart
321
liver
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
75
artery
70
musculature of body
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
240
AMP
152
HPAP
Genome assembly (visualization)
222
hg19
208
GRCh38
Lab
240
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
5
audit script error
Audit category:
21
missing controlled_by
biosample_type!
cell line
in vitro differentiated cells
month_released!
August, 2017
BIOSAMPLE
ASSAY
392 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
DNase-seq
Hi-C
RRBS
FAIRE-seq
RNA microarray
primary cell
pancreatic alpha cell
52
34
12
31
1
pancreatic beta cell
21
22
12
16
1
pancreatic acinar cell
4
8
12
8
1
pancreatic ductal cell
4
4
10
13
endothelial cell of umbilical vein
17
2
2
1
+ See 19 more…
tissue
pigmented layer of retina
2
12
renal glomerulus
1
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