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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
36
total RNA-seq
19
ATAC-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
37
DNA binding
36
Transcription
20
DNA accessibility
1
3D chromatin structure
Target of assay
27
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
9
control
4
transcription factor
3
RNA binding protein
3
nucleotide modification
1
chromatin remodeller
Date released
26
February, 2021
26
May, 2021
19
December, 2017
16
November, 2019
6
November, 2020
5
March, 2020
2
August, 2021
2
October, 2019
1
February, 2023
Available data
75
bam
70
bigWig
37
tsv
33
bed narrowPeak
19
fastq
15
bigBed narrowPeak
3
tagAlign
1
bedpe bed3+
1
hic
Organism
102
Homo sapiens
Biosample type
406
primary cell
79
cell line
24
in vitro differentiated cells
15
tissue
Organ
416
liver
103
epithelium
97
connective tissue
95
pancreas
67
heart
66
artery
66
blood vessel
66
vasculature
61
blood
61
bodily fluid
37
embryo
19
kidney
1
adipose tissue
1
mammary gland
Project
99
AMP
4
T1D
Genome assembly (visualization)
72
hg19
69
GRCh38
Lab
97
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
81
inconsistent ontology term
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
103 results
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ChIP-seq
total RNA-seq
ATAC-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
15
33
19
6
2
1
1
glomerular visceral epithelial cell
1
1
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
endothelial cell
1
intermediate endothelial cell
1
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