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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ATAC-seq
55
total RNA-seq
8
Hi-C
6
MeRIP-seq
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
81
DNA accessibility
55
Transcription
DNA methylation
8
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
52
February, 2023
39
May, 2022
19
September, 2020
16
May, 2021
7
August, 2020
6
November, 2020
3
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
2
July, 2019
1
December, 2019
1
November, 2019
Available data
bam
301
bigWig
251
fastq
151
bed narrowPeak
150
tsv
76
bigBed narrowPeak
39
zippedFastqFolder
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
153
Homo sapiens
Biosample type
111
primary cell
28
cell line
15
tissue
Organ
208
pancreas
206
kidney
154
epithelium
138
heart
104
liver
93
bone element
86
connective tissue
53
eye
50
blood vessel
50
vasculature
45
adipose tissue
41
brain
39
artery
34
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
105
HPAP
49
AMP
Genome assembly (visualization)
22
hg19
10
GRCh38
Lab
105
Klaus Kaestner, Upenn
43
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
27
inconsistent ontology term
5
audit script error
files.file_type!
bam
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
154 results
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ATAC-seq
total RNA-seq
Hi-C
MeRIP-seq
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
29
42
1
pancreatic beta cell
16
11
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
+ See 3 more…
cell line
EndoC_BH1
18
1
6
2
1
tissue
pigmented layer of retina
12
2
renal glomerulus
1
See all biosamples
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