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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ATAC-seq
55
total RNA-seq
47
WGBS
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
71
DNA accessibility
55
Transcription
53
DNA methylation
8
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
52
February, 2023
16
May, 2021
16
September, 2020
8
July, 2019
6
February, 2021
6
November, 2020
3
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
1
December, 2019
1
November, 2019
Available data
80
zippedFastqFolder
76
fastq
bam
13
bed narrowPeak
10
tsv
9
bigWig
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
hdf5
2
tagAlign
1
bigBed narrowPeak
1
tar
Organism
196
Homo sapiens
Biosample type
154
primary cell
28
cell line
15
tissue
Organ
243
pancreas
197
epithelium
135
kidney
110
liver
107
heart
93
bone element
90
connective tissue
54
eye
48
adipose tissue
41
brain
39
musculature of body
20
lung
16
vasculature
15
blood vessel
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
4
artery
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
142
HPAP
55
AMP
Genome assembly (visualization)
28
hg19
GRCh38
Lab
142
Klaus Kaestner, Upenn
49
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
5
audit script error
files.file_type!
bam
assembly!
GRCh38
BIOSAMPLE
ASSAY
197 results
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ATAC-seq
total RNA-seq
WGBS
Hi-C
MeRIP-seq
RRBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
22
42
31
1
pancreatic beta cell
13
11
16
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
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cell line
EndoC_BH1
18
1
6
2
1
tissue
pigmented layer of retina
12
2
renal glomerulus
1
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