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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ATAC-seq
55
total RNA-seq
47
WGBS
6
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
81
DNA accessibility
55
Transcription
53
DNA methylation
6
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
52
February, 2023
19
September, 2020
16
May, 2021
7
August, 2020
6
February, 2021
6
July, 2019
6
November, 2020
3
March, 2020
3
October, 2019
3
October, 2022
2
August, 2021
1
December, 2019
1
November, 2019
Available data
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
hdf5
1
tar
Organism
204
Homo sapiens
Biosample type
162
primary cell
28
cell line
15
tissue
Organ
256
pancreas
210
kidney
205
epithelium
142
heart
109
liver
93
bone element
90
connective tissue
54
eye
49
adipose tissue
49
vasculature
48
blood vessel
40
brain
39
artery
39
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
152
HPAP
53
AMP
Genome assembly (visualization)
26
hg19
10
GRCh38
Lab
152
Klaus Kaestner, Upenn
47
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
5
audit script error
files.file_type!
hdf5
bam
BIOSAMPLE
ASSAY
205 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
Hi-C
MeRIP-seq
RRBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
choroid plexus epithelial cell
1
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cell line
EndoC_BH1
18
1
6
2
1
tissue
pigmented layer of retina
12
2
renal glomerulus
1
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