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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
22
ATAC-seq
17
DNase-seq
Assay category
39
DNA accessibility
36
DNA binding
Target of assay
29
histone
29
histone modification
15
narrow histone mark
14
broad histone mark
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
18
June, 2019
14
December, 2017
14
September, 2018
13
October, 2019
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2017
Available data
292
bigWig
284
bam
181
fastq
146
tsv
138
bed narrowPeak
75
bigBed narrowPeak
20
bed broadPeak
20
bigBed broadPeak
19
bed bed3+
5
tagAlign
Organism
75
Homo sapiens
Biosample type
60
primary cell
14
in vitro differentiated cells
1
cell line
Organ
326
liver
126
brain
103
kidney
94
heart
89
pancreas
83
limb
82
vasculature
78
blood vessel
75
epithelium
54
blood
54
bodily fluid
46
musculature of body
26
nerve
25
artery
25
connective tissue
18
ureter
13
spleen
12
vein
9
adipose tissue
6
eye
Project
75
AMP
Genome assembly (visualization)
75
GRCh38
70
hg19
Lab
75
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
ATAC-seq
DNase-seq
primary cell
endothelial cell of umbilical vein
10
2
pancreatic beta cell
7
pancreatic alpha cell
6
kidney epithelial cell
4
1
pancreatic acinar cell
5
+ See 12 more…
in vitro differentiated cells
hepatocyte
14
cell line
glomerular visceral epithelial cell
1
See all biosamples
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