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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
single cell RNA-seq
55
ChIP-seq
32
ATAC-seq
28
total RNA-seq
Assay category
94
Transcription
55
DNA binding
32
DNA accessibility
Target of assay
51
histone
51
histone modification
28
narrow histone mark
23
broad histone mark
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
61
September, 2018
33
July, 2018
29
April, 2018
17
August, 2017
16
December, 2017
7
August, 2020
5
September, 2017
4
November, 2017
3
August, 2018
3
September, 2020
2
October, 2018
1
June, 2018
Available data
292
bigWig
284
bam
181
fastq
146
tsv
138
bed narrowPeak
75
bigBed narrowPeak
20
bed broadPeak
20
bigBed broadPeak
19
bed bed3+
5
tagAlign
Organism
181
Homo sapiens
Biosample type
165
primary cell
16
in vitro differentiated cells
Organ
357
pancreas
343
liver
181
epithelium
75
connective tissue
54
blood
54
bodily fluid
23
adipose tissue
19
embryo
16
spleen
15
brain
4
vasculature
2
blood vessel
Project
171
AMP
10
HPAP
Genome assembly (visualization)
181
GRCh38
173
hg19
Lab
171
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
3
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
181 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
primary cell
pancreatic alpha cell
12
7
13
10
pancreatic beta cell
12
7
10
10
pancreatic ductal cell
9
13
4
4
pancreatic acinar cell
9
8
5
4
pancreatic delta cell
11
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in vitro differentiated cells
hepatocyte
14
Hepatic endoderm
2
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