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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
DNase-seq
6
ChIP-seq
6
RRBS
Assay category
16
DNA accessibility
6
DNA binding
6
DNA methylation
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
narrow histone mark
2
transcription factor
Date released
14
June, 2019
6
July, 2019
4
November, 2017
4
October, 2019
Available data
317
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
28
Homo sapiens
Biosample type
28
primary cell
Organ
82
kidney
66
liver
50
musculature of body
49
brain
38
heart
37
limb
28
epithelium
27
pancreas
19
vasculature
18
ureter
14
blood vessel
13
connective tissue
5
adipose tissue
5
eye
4
artery
4
vein
3
spleen
2
nerve
1
pericardium
Project
28
AMP
Genome assembly (visualization)
22
hg19
20
GRCh38
Lab
28
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
28 results
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DNase-seq
ChIP-seq
RRBS
primary cell
choroid plexus epithelial cell
1
2
1
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
1
2
epithelial cell of proximal tubule
1
1
glomerular visceral epithelial cell
2
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