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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
DNase-seq
9
ChIP-seq
2
Hi-C
Assay category
16
DNA accessibility
9
DNA binding
2
3D chromatin structure
Target of assay
7
histone
7
histone modification
4
narrow histone mark
3
broad histone mark
2
RNA binding protein
2
transcription factor
Date released
14
June, 2019
4
November, 2017
4
October, 2019
3
August, 2021
2
July, 2019
Available data
317
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
27
Homo sapiens
Biosample type
27
primary cell
Organ
78
kidney
71
liver
50
brain
47
musculature of body
43
pancreas
36
limb
30
heart
29
connective tissue
27
epithelium
19
vasculature
18
ureter
15
blood vessel
7
adipose tissue
4
artery
4
eye
4
vein
3
embryo
2
nerve
1
spleen
Project
27
AMP
Genome assembly (visualization)
23
GRCh38
21
hg19
Lab
27
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
27 results
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DNase-seq
ChIP-seq
Hi-C
primary cell
brain microvascular endothelial cell
1
2
1
endothelial cell of umbilical vein
2
2
hepatocyte
1
3
choroid plexus epithelial cell
1
2
glomerular visceral epithelial cell
2
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