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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
22
ATAC-seq
1
DNase-seq
1
FAIRE-seq
Assay category
32
DNA binding
24
DNA accessibility
Target of assay
27
histone
27
histone modification
14
broad histone mark
13
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
14
December, 2017
14
September, 2018
12
October, 2019
5
September, 2017
4
June, 2019
4
May, 2019
3
August, 2017
Available data
317
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
56
Homo sapiens
Biosample type
41
primary cell
14
in vitro differentiated cells
1
cell line
Organ
301
liver
92
pancreas
90
brain
68
blood vessel
68
vasculature
64
heart
56
epithelium
54
blood
54
bodily fluid
48
limb
27
musculature of body
26
kidney
24
nerve
21
artery
20
connective tissue
12
spleen
11
vein
9
adipose tissue
2
eye
Project
56
AMP
Genome assembly (visualization)
56
hg19
55
GRCh38
Lab
56
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
56 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
1
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
kidney epithelial cell
4
+ See 3 more…
in vitro differentiated cells
hepatocyte
14
cell line
glomerular visceral epithelial cell
1
See all biosamples
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