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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
22
ATAC-seq
17
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
41
DNA binding
40
DNA accessibility
2
3D chromatin structure
Target of assay
34
histone
34
histone modification
17
broad histone mark
17
narrow histone mark
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
18
June, 2019
16
October, 2019
14
December, 2017
14
September, 2018
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2017
3
August, 2021
2
July, 2019
Available data
317
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
83
Homo sapiens
Biosample type
68
primary cell
14
in vitro differentiated cells
1
cell line
Organ
372
liver
131
brain
121
pancreas
104
kidney
94
heart
87
vasculature
84
limb
83
blood vessel
83
epithelium
61
musculature of body
54
blood
54
bodily fluid
48
connective tissue
26
nerve
25
artery
18
ureter
15
adipose tissue
15
vein
13
spleen
6
eye
3
embryo
Project
83
AMP
Genome assembly (visualization)
78
GRCh38
77
hg19
Lab
83
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
BIOSAMPLE
ASSAY
83 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
12
2
1
pancreatic beta cell
7
pancreatic alpha cell
6
kidney epithelial cell
4
1
pancreatic acinar cell
5
+ See 13 more…
in vitro differentiated cells
hepatocyte
14
cell line
glomerular visceral epithelial cell
1
See all biosamples
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