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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
22
ATAC-seq
15
DNase-seq
Assay category
37
DNA accessibility
26
DNA binding
Target of assay
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
18
June, 2019
14
December, 2017
14
September, 2018
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2017
1
October, 2019
Available data
297
bam
286
bigWig
257
fastq
156
tsv
138
bed narrowPeak
80
zippedFastqFolder
63
bigBed narrowPeak
19
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
4
bedpe bed3+
4
hic
3
cool
2
hdf5
Organism
63
Homo sapiens
Biosample type
48
primary cell
14
in vitro differentiated cells
1
cell line
Organ
364
liver
128
brain
104
kidney
99
pancreas
94
heart
85
vasculature
84
limb
81
blood vessel
78
epithelium
60
musculature of body
54
blood
54
bodily fluid
29
connective tissue
26
nerve
25
artery
18
ureter
vein
13
spleen
11
adipose tissue
6
eye
Project
63
AMP
Genome assembly (visualization)
63
GRCh38
57
hg19
Lab
63
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
organ_slims!
vein
BIOSAMPLE
ASSAY
63 results
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ChIP-seq
ATAC-seq
DNase-seq
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
kidney epithelial cell
4
1
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 11 more…
in vitro differentiated cells
hepatocyte
14
cell line
glomerular visceral epithelial cell
1
See all biosamples
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