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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
22
ATAC-seq
18
DNase-seq
1
FAIRE-seq
Assay category
50
DNA binding
41
DNA accessibility
Target of assay
37
histone
37
histone modification
20
broad histone mark
17
narrow histone mark
13
transcription factor
7
RNA binding protein
3
other context
3
other post-translational modification
1
chromatin remodeller
Date released
18
June, 2019
16
October, 2019
14
December, 2017
14
September, 2018
6
January, 2019
5
September, 2017
4
May, 2019
4
November, 2017
4
November, 2018
3
August, 2017
3
December, 2018
Available data
341
bam
317
bigWig
281
fastq
165
bed narrowPeak
157
tsv
89
bigBed narrowPeak
80
zippedFastqFolder
23
bed broadPeak
23
bigBed broadPeak
22
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
7
tagAlign
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
91
Homo sapiens
Biosample type
63
primary cell
14
in vitro differentiated cells
13
tissue
1
cell line
Organ
364
liver
128
brain
104
kidney
99
pancreas
94
heart
85
vasculature
84
limb
81
blood vessel
78
epithelium
60
musculature of body
54
blood
54
bodily fluid
29
connective tissue
26
nerve
25
artery
18
ureter
15
vein
13
spleen
11
adipose tissue
6
eye
Project
91
AMP
Genome assembly (visualization)
88
GRCh38
85
hg19
Lab
91
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
BIOSAMPLE
ASSAY
91 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
12
2
1
pancreatic beta cell
7
pancreatic alpha cell
6
kidney epithelial cell
4
1
pancreatic acinar cell
5
+ See 12 more…
in vitro differentiated cells
hepatocyte
14
tissue
spleen
12
1
cell line
glomerular visceral epithelial cell
1
See all biosamples
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