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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
DNase-seq
6
ChIP-seq
6
RRBS
1
FAIRE-seq
Assay category
17
DNA accessibility
6
DNA binding
6
DNA methylation
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
narrow histone mark
2
transcription factor
Date released
14
June, 2019
6
July, 2019
5
October, 2019
4
November, 2017
Available data
317
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
29
Homo sapiens
Biosample type
29
primary cell
Organ
82
kidney
69
liver
50
musculature of body
49
brain
38
heart
37
limb
29
epithelium
27
pancreas
20
vasculature
18
ureter
15
blood vessel
13
connective tissue
5
adipose tissue
5
eye
5
vein
4
artery
3
spleen
2
nerve
1
pericardium
Project
29
AMP
Genome assembly (visualization)
23
hg19
20
GRCh38
Lab
29
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
29 results
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DNase-seq
ChIP-seq
RRBS
FAIRE-seq
primary cell
endothelial cell of umbilical vein
2
2
1
choroid plexus epithelial cell
1
2
1
brain microvascular endothelial cell
1
2
epithelial cell of proximal tubule
1
1
glomerular visceral epithelial cell
2
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