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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
DNase-seq
4
ChIP-seq
Assay category
19
DNA accessibility
4
DNA binding
Target of assay
4
histone
4
histone modification
2
RNA binding protein
broad histone mark
2
narrow histone mark
2
transcription factor
Date released
17
June, 2019
4
November, 2017
2
October, 2019
Available data
276
bam
262
bigWig
234
fastq
159
tsv
129
bed narrowPeak
80
zippedFastqFolder
65
bigBed narrowPeak
23
bed bed3+
23
bed broadPeak
23
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
6
tagAlign
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
23
Homo sapiens
Biosample type
20
primary cell
3
tissue
Organ
78
kidney
55
liver
43
brain
38
musculature of body
36
limb
30
heart
20
epithelium
18
ureter
15
vasculature
13
pancreas
11
blood vessel
10
connective tissue
4
artery
4
eye
3
adipose tissue
2
nerve
2
vein
1
spleen
Project
23
AMP
Genome assembly (visualization)
23
GRCh38
17
hg19
Lab
23
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
23 results
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DNase-seq
ChIP-seq
primary cell
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 8 more…
tissue
retina
3
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