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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
DNase-seq
8
ChIP-seq
2
ATAC-seq
Assay category
25
DNA accessibility
8
DNA binding
Target of assay
16
histone
16
histone modification
broad histone mark
6
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
18
June, 2019
4
August, 2017
4
November, 2017
3
October, 2019
2
November, 2018
1
March, 2019
1
October, 2017
Available data
699
bam
620
bigWig
441
fastq
439
tsv
206
bed narrowPeak
101
bigBed narrowPeak
80
zippedFastqFolder
43
bed bed3+
33
bed broadPeak
27
bigBed broadPeak
14
tagAlign
12
bed bedMethyl
12
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
txt
3
cool
3
hdf5
1
bedpe
1
tar
Organism
31
Homo sapiens
Biosample type
20
primary cell
12
tissue
1
cell line
Organ
78
kidney
55
liver
43
brain
38
musculature of body
36
limb
30
heart
20
epithelium
18
ureter
15
vasculature
13
pancreas
11
blood vessel
10
connective tissue
4
artery
4
eye
3
adipose tissue
2
nerve
2
vein
1
spleen
Project
33
AMP
Genome assembly (visualization)
30
GRCh38
24
hg19
Lab
31
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
33 results
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DNase-seq
ChIP-seq
ATAC-seq
primary cell
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 8 more…
tissue
body of pancreas
4
islet of Langerhans
2
2
pancreas
2
2
cell line
Panc1
1
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