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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
RRBS
4
WGBS
1
Hi-C
Assay category
12
DNA methylation
1
3D chromatin structure
Date released
8
July, 2019
4
November, 2018
1
March, 2019
Available data
791
bam
713
bigWig
500
fastq
439
tsv
292
bed narrowPeak
145
bigBed narrowPeak
80
zippedFastqFolder
50
bed bed3+
43
bed broadPeak
29
bigBed broadPeak
23
tagAlign
12
bed bedMethyl
12
bigBed bedMethyl
9
hic
8
bedpe bed3+
6
txt
3
cool
3
hdf5
1
bedpe
1
tar
Organism
13
Homo sapiens
Biosample type
7
tissue
6
primary cell
Organ
8
heart
7
pancreas
6
epithelium
4
kidney
4
musculature of body
3
connective tissue
3
liver
2
adipose tissue
2
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
13
AMP
Genome assembly (visualization)
9
hg19
4
GRCh38
Lab
12
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
13 results
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RRBS
WGBS
Hi-C
tissue
pancreas
1
2
body of pancreas
2
islet of Langerhans
1
1
primary cell
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
renal cortical epithelial cell
1
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