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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
20
DNase-seq
Assay category
64
DNA binding
20
DNA accessibility
Target of assay
46
transcription factor
18
histone
18
histone modification
10
broad histone mark
8
narrow histone mark
6
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
62
November, 2017
15
June, 2019
4
October, 2019
3
November, 2018
Available data
972
bam
899
bigWig
707
fastq
573
bed narrowPeak
419
bigBed narrowPeak
325
tsv
89
tagAlign
84
bed broadPeak
84
bigBed broadPeak
80
zippedFastqFolder
29
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
8
hic
7
bedpe bed3+
4
tar
3
cool
2
hdf5
1
bed bed3
1
csv
1
vcf
Organism
84
Homo sapiens
Biosample type
58
cell line
23
primary cell
3
tissue
Organ
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
84
AMP
Genome assembly (visualization)
78
hg19
68
GRCh38
Lab
84
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
13
inconsistent control read length
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
primary cell
endothelial cell of umbilical vein
2
2
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 9 more…
tissue
liver
2
right lobe of liver
1
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