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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
22
ATAC-seq
17
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
40
DNA accessibility
39
DNA binding
2
3D chromatin structure
Target of assay
32
histone
32
histone modification
17
narrow histone mark
15
broad histone mark
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
18
June, 2019
14
December, 2017
14
October, 2019
14
September, 2018
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2017
3
August, 2021
2
July, 2019
Available data
317
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
81
Homo sapiens
Biosample type
66
primary cell
14
in vitro differentiated cells
1
cell line
Organ
366
liver
130
brain
113
pancreas
104
kidney
94
heart
85
vasculature
84
limb
81
blood vessel
81
epithelium
54
blood
54
bodily fluid
48
musculature of body
47
connective tissue
26
nerve
25
artery
18
ureter
14
adipose tissue
13
spleen
13
vein
6
eye
3
embryo
Project
81
AMP
Genome assembly (visualization)
78
GRCh38
75
hg19
Lab
81
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
BIOSAMPLE
ASSAY
81 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
pancreatic alpha cell
6
kidney epithelial cell
4
1
pancreatic acinar cell
5
+ See 13 more…
in vitro differentiated cells
hepatocyte
14
cell line
glomerular visceral epithelial cell
1
See all biosamples
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