Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
DNase-seq
5
Hi-C
3
ChIP-seq
Assay category
16
DNA accessibility
5
3D chromatin structure
3
DNA binding
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
14
June, 2019
3
August, 2021
3
October, 2022
2
July, 2019
2
October, 2019
Available data
317
bam
301
bigWig
257
fastq
156
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
24
Homo sapiens
Biosample type
24
primary cell
Organ
78
kidney
36
limb
35
brain
34
musculature of body
32
pancreas
30
heart
27
connective tissue
24
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
21
AMP
3
HPAP
Genome assembly (visualization)
19
GRCh38
18
hg19
Lab
21
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
24 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
Hi-C
ChIP-seq
primary cell
hepatocyte
1
3
brain microvascular endothelial cell
1
1
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 12 more…
See all biosamples
Download