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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
total RNA-seq
70
single cell RNA-seq
54
ATAC-seq
19
DNase-seq
6
RRBS
5
Hi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
148
Transcription
DNA binding
74
DNA accessibility
6
DNA methylation
5
3D chromatin structure
Date released
40
September, 2018
33
April, 2018
33
July, 2018
26
February, 2021
22
May, 2021
15
February, 2023
14
June, 2019
13
July, 2019
11
October, 2019
6
December, 2019
5
March, 2020
5
September, 2017
3
August, 2017
3
August, 2018
3
November, 2019
2
August, 2021
2
October, 2018
1
June, 2018
Available data
190
bigWig
188
bam
150
tsv
116
fastq
54
bed narrowPeak
40
bigBed narrowPeak
18
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
3
hic
2
bedpe bed3+
2
hdf5
1
tar
Organism
236
Homo sapiens
Biosample type
162
primary cell
58
cell line
15
tissue
2
in vitro differentiated cells
Organ
526
connective tissue
507
pancreas
418
adipose tissue
259
heart
237
epithelium
186
liver
158
bone element
134
vasculature
131
blood vessel
111
kidney
107
artery
68
brain
57
musculature of body
56
eye
56
limb
18
ureter
16
skeleton
15
embryo
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
235
AMP
2
T1D
Genome assembly (visualization)
207
hg19
187
GRCh38
Lab
237
AMP-T2D consortium
152
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
60
inconsistent ontology term
2
audit script error
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
237 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
RRBS
Hi-C
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
pancreatic beta cell
10
12
7
pancreatic alpha cell
10
12
6
pancreatic acinar cell
4
12
5
pancreatic ductal cell
4
10
4
pancreatic delta cell
11
+ See 19 more…
cell line
EndoC_BH1
33
19
1
2
1
glomerular visceral epithelial cell
1
1
tissue
pigmented layer of retina
2
12
renal glomerulus
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
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