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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
70
single cell RNA-seq
69
ATAC-seq
66
ChIP-seq
47
WGBS
18
DNase-seq
7
Hi-C
6
RRBS
1
FAIRE-seq
Assay category
163
Transcription
88
DNA accessibility
66
DNA binding
53
DNA methylation
7
3D chromatin structure
Target of assay
52
histone
52
histone modification
27
narrow histone mark
25
broad histone mark
9
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
61
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
33
October, 2019
August, 2017
20
June, 2019
19
September, 2020
13
July, 2019
7
August, 2020
6
February, 2021
6
November, 2017
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
214
bigWig
213
bam
209
fastq
116
tsv
89
bed narrowPeak
80
zippedFastqFolder
58
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
377
Homo sapiens
Biosample type
377
primary cell
79
cell line
24
in vitro differentiated cells
15
tissue
Organ
377
epithelium
305
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
225
AMP
152
HPAP
Genome assembly (visualization)
210
hg19
208
GRCh38
Lab
225
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
month_released!
August, 2017
BIOSAMPLE
ASSAY
377 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
DNase-seq
Hi-C
RRBS
FAIRE-seq
primary cell
pancreatic alpha cell
52
12
34
31
1
pancreatic beta cell
21
12
22
16
1
pancreatic acinar cell
4
12
8
8
1
pancreatic ductal cell
4
10
4
13
endothelial cell of umbilical vein
17
2
2
1
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