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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
47
WGBS
42
ATAC-seq
3
Hi-C
2
ChIP-seq
Assay category
55
Transcription
47
DNA methylation
42
DNA accessibility
3
3D chromatin structure
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
80
May, 2022
37
February, 2023
19
September, 2020
August, 2020
6
February, 2021
3
March, 2020
3
October, 2022
1
May, 2021
Available data
80
zippedFastqFolder
62
fastq
8
tsv
7
bigWig
4
bam
3
bedpe bed3+
3
cool
3
hic
2
bed narrowPeak
Organism
149
Homo sapiens
Biosample type
145
primary cell
4
cell line
Organ
179
pancreas
149
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
145
HPAP
4
T1D
Genome assembly (visualization)
7
GRCh38
7
hg19
Lab
145
Klaus Kaestner, Upenn
4
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
3
audit script error
month_released!
August, 2020
award.project!
AMP
BIOSAMPLE
ASSAY
149 results
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total RNA-seq
WGBS
ATAC-seq
Hi-C
ChIP-seq
primary cell
pancreatic alpha cell
42
31
24
1
pancreatic beta cell
11
16
14
1
pancreatic acinar cell
4
1
cell line
EndoC_BH1
2
2
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