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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ATAC-seq
55
total RNA-seq
47
WGBS
8
Hi-C
6
MeRIP-seq
6
RRBS
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
81
DNA accessibility
55
Transcription
53
DNA methylation
8
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
52
February, 2023
19
September, 2020
16
May, 2021
8
July, 2019
7
August, 2020
6
February, 2021
6
November, 2020
3
March, 2020
3
October, 2019
3
October, 2022
August, 2021
1
December, 2019
1
November, 2019
Available data
bam
298
bigWig
257
fastq
156
tsv
148
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
18
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
3
tagAlign
2
hdf5
1
tar
Organism
204
Homo sapiens
Biosample type
164
primary cell
26
cell line
15
tissue
Organ
253
pancreas
205
epithelium
93
bone element
86
connective tissue
80
kidney
79
liver
54
eye
50
heart
48
adipose tissue
45
vasculature
44
blood vessel
43
brain
39
musculature of body
37
artery
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
152
HPAP
53
AMP
Genome assembly (visualization)
28
hg19
10
GRCh38
Lab
152
Klaus Kaestner, Upenn
47
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
26
inconsistent ontology term
5
audit script error
month_released!
August, 2021
files.file_type!
bam
BIOSAMPLE
ASSAY
205 results
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ATAC-seq
total RNA-seq
WGBS
Hi-C
MeRIP-seq
RRBS
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
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cell line
EndoC_BH1
18
1
6
1
tissue
pigmented layer of retina
12
2
renal glomerulus
1
See all biosamples
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